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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36904264_36913506_F

Intron Information:

Intron Rank:
127284
Intron Class:
major
Intron Phase:
Intron Coordinates:
36904264 - 36913506
Intron Length:
9243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
ATTTTCTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTTTCTGATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.9
0.56
1
75
39.2
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
60.9
0.34
1.7
74.43
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018637
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040852
36904117 - 36913640
9524