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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36999949_37004157_R

Intron Information:

Intron Rank:
131097
Intron Class:
major
Intron Phase:
Intron Coordinates:
36999949 - 37004157
Intron Length:
4209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTACCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
CTACCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
81.5
0.71
0.8
75.5
32.7
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
57
0.21
1.7
65.38
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017748
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043789
36988477 - 37004679
16203