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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37024148_37032517_R

Intron Information:

Intron Rank:
133212
Intron Class:
major
Intron Phase:
Intron Coordinates:
37024148 - 37032517
Intron Length:
8370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATTATCATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.9
0.74
0.8
81.6
30.2
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
62.2
0.46
1.6
79.9
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018909
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045863
37022309 - 37032552
10244