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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37055677_37063397_R

Intron Information:

Intron Rank:
133208
Intron Class:
major
Intron Phase:
Intron Coordinates:
37055677 - 37063397
Intron Length:
7721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018909
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032877
37035598 - 37063525
27928