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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37112169_37112251_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37112169 - 37112251
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATCCCTTATAA
Flanking Amino Acid:
MSDTNWWKGTC
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
86.7
0.82
0.7
84.5
23.4
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
61
0.34
1.7
71.95
39.3

Associated Gene:

Gene:
OSTF1
Ensembl Gene ID:
ENSAPLG00000022909
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044905
37103290 - 37112877
9588
ENSAPLT00000035948
37103290 - 37112657
9368