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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37121417_37124225_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37121417 - 37124225
Intron Length:
2809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGAGTTTTAACT
Flanking Amino Acid:
SGSFHRFCFCSGKEELRRKA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.5
0.64
1
75.7
38
Minor 5ss
33.7
-1.9
3
42
44.7
Minor BPS
62.2
0.46
1.4
71.3
39.7

Associated Gene:

Gene:
CARNMT1
Ensembl Gene ID:
ENSAPLG00000014643
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015358
37121331 - 37130274
8944