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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37124283_37124709_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37124283 - 37124709
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTCTAAATC
Flanking Amino Acid:
MKVLVIGLGGVTNGGKTTL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.8
0.58
1
76.2
36.7
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
65.8
0.48
1.6
74.33
36.8

Associated Gene:

Gene:
CARNMT1
Ensembl Gene ID:
ENSAPLG00000014643
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015358
37121331 - 37130274
8944
ENSAPLT00000015270
37124254 - 37153623
29370
ENSAPLT00000045330
37124254 - 37161909
37656