Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37124801_37125400_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37124801 - 37125400

Intron Length:

600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAGTA

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

AAGTGCTGATTT

Flanking Amino Acid:

DIISQDDFFKPESEVETDER

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

75.2

35.1

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

97.2

1.06

0.5

96.4

12.2

Minor 5ss

39.6

-1.2

3.5

48.2

Minor BPS

44.9

-0.3

60.3

43.4

Associated Gene:

Gene:

CARNMT1

Ensembl Gene ID:

ENSAPLG00000014643

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045330

37124254 - 37161909

37656

ENSAPLT00000015358

37121331 - 37130274

8944

ENSAPLT00000015270

37124254 - 37153623

29370