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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37127012_37127090_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37127012 - 37127090
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GAGAACTAAATA
Flanking Amino Acid:
IVEGFLLYNYEPLNELWNRR
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
66.4
45.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
42.4
-0.8
2.9
54.3
43.8
Minor BPS
45.7
-0.3
1.8
51.15
40.2

Associated Gene:

Gene:
CARNMT1
Ensembl Gene ID:
ENSAPLG00000014643
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015358
37121331 - 37130274
8944
ENSAPLT00000015270
37124254 - 37153623
29370
ENSAPLT00000045330
37124254 - 37161909
37656