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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37127163_37128071_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37127163 - 37128071
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
AAAACTTGCATG
Flanking Amino Acid:
LPYEECKRRRSTRVYQPADT
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
77.6
0.62
0.9
73.9
36.4
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
41.4
-0.8
1.8
41.5
36.8

Associated Gene:

Gene:
CARNMT1
Ensembl Gene ID:
ENSAPLG00000014643
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015358
37121331 - 37130274
8944