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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37198691_37199289_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37198691 - 37199289
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGACAG
5'SS Class:
weak_major
3'SS Sequence:
TCTCTAATGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTCTTTATCT
Flanking Amino Acid:
LCCCGRLIGD
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
48.5
41.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
49.7
-0
1.8
62.8
42.1
Minor 5ss
40.3
-1.1
3.1
57.4
46.7
Minor BPS
69
0.67
1.6
81.9
40

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018135
37198689 - 37237971
39283