Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37199062_37199367_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

37199062 - 37199367

Intron Length:

306

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTCATGTAT

5'SS Class:

weak_major

3'SS Sequence:

CTGCCCTCCAGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GATTAAA

U12 Branch Point Sequence:

TGTCTATCAGCC

Flanking Amino Acid:

TVSSVLKTENKDEEWSVQKH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.3

0.15

1.3

62.2

38.9

Major BPS

64.8

0.37

1.2

67.9

36.3

Major PPT

49.6

-0

1.6

56.8

33.5

Minor 5ss

35.6

-1.6

3.3

47.6

42.4

Minor BPS

44.6

-0.4

1.9

58.33

39.8

Associated Gene:

Gene:

TRPM6

Ensembl Gene ID:

ENSAPLG00000014165

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019720

37198979 - 37237971

38993