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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37199468_37199862_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37199468 - 37199862
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCATG
5'SS Class:
major
3'SS Sequence:
CTATTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ATTTTTTTGACT
Flanking Amino Acid:
QDGDHTYHAKYIRLSYDSNL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.2
66.5
44.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85
0.79
0.8
77.1
36.9
Minor 5ss
45.4
-0.5
2.5
57.7
46.7
Minor BPS
77.4
0.94
1
88.54
29.3

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019720
37198979 - 37237971
38993
ENSAPLT00000018135
37198689 - 37237971
39283
ENSAPLT00000014750
37199336 - 37264972
65637
ENSAPLT00000026911
37195742 - 37237971
42230