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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37203601_37204227_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37203601 - 37204227
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CATATTTTAGCA
Flanking Amino Acid:
AFTHKHTGDTGELRPQVKEE
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.8
38.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
83.5
0.75
0.8
80.7
36.3
Minor 5ss
36
-1.6
2.9
40.9
45.4
Minor BPS
51.6
0.05
1.6
60.51
39.7

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026911
37195742 - 37237971
42230
ENSAPLT00000019720
37198979 - 37237971
38993
ENSAPLT00000018135
37198689 - 37237971
39283
ENSAPLT00000014750
37199336 - 37264972
65637
ENSAPLT00000047053
37199911 - 37209297
9387