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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37205532_37211000_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37205532 - 37211000
Intron Length:
5469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTTTCTAACCT
Flanking Amino Acid:
HILVYGQHWKVGALEQAMQD
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.1
0.48
1
71.7
33.1
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
53.4
0.19
2
73.16
44.2

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014750
37199336 - 37264972
65637