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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37213906_37214584_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37213906 - 37214584
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TTTCTCAGAACC
Flanking Amino Acid:
LYNDLYRKHKNNQMGSRMAS
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
78
0.63
0.8
77.8
29.4
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
56.9
0.2
1.7
73.87
36

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014750
37199336 - 37264972
65637