Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37213906_37214906_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

37213906 - 37214906

Intron Length:

1001

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTCT

5'SS Class:

strong_major

3'SS Sequence:

GGTGCAGCAAGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGCCAG

U12 Branch Point Sequence:

GGTGCAGCAAGA

Flanking Amino Acid:

LYNDLYRKHKLEGDRPSTSK

Intron Amino Acid Position:

526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

83.8

Major BPS

40.5

-0.6

1.6

47.5

Major PPT

42.4

-0.4

1.7

36.3

39.7

Minor 5ss

42.2

-0.9

2.9

59.5

Minor BPS

35.6

-1.1

2.4

46.24

42.8

Associated Gene:

Gene:

TRPM6

Ensembl Gene ID:

ENSAPLG00000014165

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026911

37195742 - 37237971

42230

ENSAPLT00000019720

37198979 - 37237971

38993

ENSAPLT00000018135

37198689 - 37237971

39283