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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37214672_37218647_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37214672 - 37218647
Intron Length:
3976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
AACAAATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
FRTAQPYKCKERSTGFHKSK
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
60
0.23
1
51
41.8
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014750
37199336 - 37264972
65637