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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37220219_37220822_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37220219 - 37220822
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCATCA
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCCTGAGTC
Flanking Amino Acid:
LKMRKNSWFKVIISILLPPT
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
62.3
39.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
42.4
-0.8
3.2
57.2
47.1
Minor BPS
62.5
0.37
1.7
74.03
36.6

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019720
37198979 - 37237971
38993
ENSAPLT00000018135
37198689 - 37237971
39283
ENSAPLT00000014750
37199336 - 37264972
65637
ENSAPLT00000026911
37195742 - 37237971
42230