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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37228039_37229455_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
37228039 - 37229455
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TCCCTACACAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCTTCCCTACAC
Flanking Amino Acid:
FGEVYAGEIDGRLLTTYLCG
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
75.5
0.63
1
66
40.9
Major PPT
48.2
-0.1
1.7
53.6
34.7
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
50.8
0
2.1
68.28
43

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026911
37195742 - 37237971
42230
ENSAPLT00000019720
37198979 - 37237971
38993
ENSAPLT00000018135
37198689 - 37237971
39283