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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37229874_37231401_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37229874 - 37231401
Intron Length:
1528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
AGTGTTTTACCT
Flanking Amino Acid:
IMVNLLIAFFNNVYYDLKSI
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.7
35.1
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
85.3
0.79
0.7
83.9
24.1
Minor 5ss
37.3
-1.4
3
46.6
35.6
Minor BPS
53.2
0.18
1.7
69.96
41.5

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026911
37195742 - 37237971
42230
ENSAPLT00000019720
37198979 - 37237971
38993
ENSAPLT00000018135
37198689 - 37237971
39283
ENSAPLT00000014750
37199336 - 37264972
65637