Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37231602_37234068_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37231602 - 37234068

Intron Length:

2467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGCAGA

5'SS Class:

major

3'SS Sequence:

CTTCTTTGTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TCACACTTAATA

Flanking Amino Acid:

SDQEEGDVGLKLYLSDEELK

Intron Amino Acid Position:

1069

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.1

62.6

43.8

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

84.6

0.78

0.8

83.9

31.1

Minor 5ss

-1.1

2.8

45.2

43.7

Minor BPS

61.8

0.37

1.5

66.88

39.3

Associated Gene:

Gene:

TRPM6

Ensembl Gene ID:

ENSAPLG00000014165

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026911

37195742 - 37237971

42230

ENSAPLT00000019720

37198979 - 37237971

38993

ENSAPLT00000018135

37198689 - 37237971

39283

ENSAPLT00000014750

37199336 - 37264972

65637