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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37251615_37252412_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37251615 - 37252412
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTCATTACCC
Flanking Amino Acid:
VKPHTIPYTPRFLEVFLIYC
Intron Amino Acid Position:
1741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
79.3
0.66
0.8
73.5
36
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
62.9
0.38
1.9
76.59
39.2

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014750
37199336 - 37264972
65637