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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37254595_37262973_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37254595 - 37262973
Intron Length:
8379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
TTATTACTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATATTATTACTT
Flanking Amino Acid:
DPSVIKPEDKRSGKMVFGPA
Intron Amino Acid Position:
1827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.7
0.69
0.8
78.9
34.4
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
51.8
0.14
1.8
71.91
39.2

Associated Gene:

Gene:
TRPM6
Ensembl Gene ID:
ENSAPLG00000014165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014750
37199336 - 37264972
65637