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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37295236_37345432_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
37295236 - 37345432
Intron Length:
50197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTCATATG
5'SS Class:
weak_major
3'SS Sequence:
TTAATGGATTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTAATTAATC
Flanking Amino Acid:
HSIHCSTVITYTLLLKPCFN
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.1
0.1
1.3
60.3
43.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
54.7
0.11
1.2
57.2
46.7
Minor 5ss
36.4
-1.5
3
47.6
41.3
Minor BPS
61.7
0.35
1.8
73.77
36.5

Associated Gene:

Gene:
RORB
Ensembl Gene ID:
ENSAPLG00000007187
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007451
37294305 - 37353939
59635