Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37345949_37349057_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37345949 - 37349057

Intron Length:

3109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TATGCTTTATTT

Flanking Amino Acid:

KCLALGMSRDAVKFGRMSKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

75.2

40.6

Major BPS

0.62

1.4

85.7

34.9

Major PPT

90.1

0.9

0.7

88.2

28.6

Minor 5ss

34.1

-1.8

3.3

45.5

44.6

Minor BPS

60.6

0.41

1.7

76.5

40.9

Associated Gene:

Gene:

RORB

Ensembl Gene ID:

ENSAPLG00000007187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028348

37294305 - 37357633

63329

ENSAPLT00000007451

37294305 - 37353939

59635