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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37353703_37357628_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
37353703 - 37357628
Intron Length:
3926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATTTTAT
5'SS Class:
weak_major
3'SS Sequence:
AGAAATGAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTAAAACCT
Flanking Amino Acid:
SIITYSKYLSY
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
71.5
34
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
46.3
-0.2
1.1
33.3
39.7
Minor 5ss
51.7
0.06
2.5
70.8
39.8
Minor BPS
41.4
-0.5
2.2
65.08
45.4

Associated Gene:

Gene:
RORB
Ensembl Gene ID:
ENSAPLG00000007187
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028348
37294305 - 37357633
63329