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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37515311_37519576_F

Intron Information:

Intron Rank:
137786
Intron Class:
major
Intron Phase:
Intron Coordinates:
37515311 - 37519576
Intron Length:
4266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACATA
5'SS Class:
major
3'SS Sequence:
GTATCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GAATCATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
73
37.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.5
0.73
0.9
76.9
37
Minor 5ss
48.4
-0.1
2.7
65.8
45.4
Minor BPS
69.9
0.7
1.6
80.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024206
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032463
37507518 - 37529114
21597