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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37527114_37528253_F

Intron Information:

Intron Rank:
137788
Intron Class:
major
Intron Phase:
Intron Coordinates:
37527114 - 37528253
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGATTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
79.5
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.79
0.8
80.9
30.8
Minor 5ss
37.9
-1.4
2.9
49.2
41
Minor BPS
51.8
0.04
1.6
61.83
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024206
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032463
37507518 - 37529114
21597