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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37991997_37993410_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37991997 - 37993410
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TCTTTTATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
NDELADSDARALYEAGERRK
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.5
0.66
1
76.7
36.2
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
ANXA1
Ensembl Gene ID:
ENSAPLG00000007359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025258
37987071 - 38008030
20960
ENSAPLT00000007737
37987398 - 38016586
29189