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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_37994502_37995644_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37994502 - 37995644
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCAG
5'SS Class:
strong_major
3'SS Sequence:
CATTTGATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTGATT
Flanking Amino Acid:
IREASRYYKEVLKRDLTQDI
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
68.8
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
77.8
0.63
0.9
74
40
Minor 5ss
39.1
-1.2
2.9
49.5
46.7
Minor BPS
63.4
0.5
1.5
81.38
33.9

Associated Gene:

Gene:
ANXA1
Ensembl Gene ID:
ENSAPLG00000007359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034219
37987398 - 38008030
20633
ENSAPLT00000025258
37987071 - 38008030
20960
ENSAPLT00000007737
37987398 - 38016586
29189