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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38021827_38024603_F

Intron Information:

Intron Rank:
127409
Intron Class:
major
Intron Phase:
Intron Coordinates:
38021827 - 38024603
Intron Length:
2777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CATCACTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.8
80.3
37.3
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
52.1
0.15
2
71.79
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018708
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040044
38021634 - 38039677
18044