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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38045294_38045749_F

Intron Information:

Intron Rank:
124479
Intron Class:
major
Intron Phase:
Intron Coordinates:
38045294 - 38045749
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAACA
5'SS Class:
major
3'SS Sequence:
TGTTGCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TGTTTAAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
73.2
30.6
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
78
0.63
0.9
69.3
41.7
Minor 5ss
30
-2.3
2.8
33.2
35
Minor BPS
45.5
-0.2
2
69.47
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017122
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044560
38040301 - 38054786
14486
ENSAPLT00000032001
38040301 - 38049576
9276
ENSAPLT00000026947
38041401 - 38047535
6135