Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38045951_38047484_F

Intron Information:

Intron Rank:

124480

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

38045951 - 38047484

Intron Length:

1534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAACT

5'SS Class:

strong_major

3'SS Sequence:

TGAACAATGACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TAGTTCTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

87.2

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

54.6

0.11

1.1

47.6

43.7

Minor 5ss

36.1

-1.6

50.2

45.8

Minor BPS

79.7

0.93

1.1

80.16

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026947

38041401 - 38047535

6135