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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38047103_38047484_F

Intron Information:

Intron Rank:
124487
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
38047103 - 38047484
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGG
5'SS Class:
major
3'SS Sequence:
TGAACAATGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAGTTCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
64.7
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
54.6
0.11
1.1
47.6
43.7
Minor 5ss
45
-0.5
2.6
58.3
46.4
Minor BPS
79.7
0.93
1.1
80.16
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017122
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032001
38040301 - 38049576
9276