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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38048693_38049474_F

Intron Information:

Intron Rank:
124489
Intron Class:
major
Intron Phase:
Intron Coordinates:
38048693 - 38049474
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAC
5'SS Class:
strong_major
3'SS Sequence:
TTGACATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTGTCGTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74
30.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.5
0.53
0.9
70.6
40
Minor 5ss
38.3
-1.3
3
50.5
46.1
Minor BPS
58
0.24
2.1
69.88
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017122
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032001
38040301 - 38049576
9276