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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38079615_38080389_F

Intron Information:

Intron Rank:
143031
Intron Class:
major
Intron Phase:
Intron Coordinates:
38079615 - 38080389
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGAAA
5'SS Class:
major
3'SS Sequence:
TCACCTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATATATTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
68.2
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.6
0.6
0.8
69.1
36.7
Minor 5ss
34.5
-1.8
3.3
49.4
46.6
Minor BPS
56
0.17
1.8
66.53
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027055
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033743
38076173 - 38083644
7472