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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38111_39676_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38111 - 39676
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTCTCCCCAAAG
Flanking Amino Acid:
TETVPSGHGAGGGADSKPVV
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
67
0.38
1
67.3
26.7
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
46.2
-0.4
2.1
53.67
46.6

Associated Gene:

Gene:
RUSC2
Ensembl Gene ID:
ENSAPLG00000023823
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038355
26121 - 58339
32219
ENSAPLT00000007727
26121 - 58339
32219
ENSAPLT00000001571
26121 - 58339
32219