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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38136420_38138386_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38136420 - 38138386
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTTCTCCAATT
Flanking Amino Acid:
ALYMGSLIKEAGFPPGVVNI
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.3
0.61
0.9
74.9
33.7
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
50.8
0.1
1.8
71.09
40.4

Associated Gene:

Gene:
ALDH1A1
Ensembl Gene ID:
ENSAPLG00000004796
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004994
38114815 - 38150888
36074
ENSAPLT00000025539
38113896 - 38152521
38626