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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38140374_38140898_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38140374 - 38140898
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTTAGTAGC
5'SS Class:
major
3'SS Sequence:
CATTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATTTCTTTACAG
Flanking Amino Acid:
SPNIIFADADLDTAVEFAHI
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
63
41.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
86
0.81
0.8
80
31.7
Minor 5ss
35
-1.7
2.6
44.8
36.7
Minor BPS
59.2
0.15
1.8
66.8
41

Associated Gene:

Gene:
ALDH1A1
Ensembl Gene ID:
ENSAPLG00000004796
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025539
38113896 - 38152521
38626
ENSAPLT00000004994
38114815 - 38150888
36074