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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38148800_38151012_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38148800 - 38151012
Intron Length:
2213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TCTGTTTTATCT
Flanking Amino Acid:
GFKMSGNGREMGEYGLHEYT
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
71.6
0.54
1
72
33.1
Major PPT
76.1
0.59
0.9
70
40.6
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
57.7
0.32
1.7
74.38
43.4

Associated Gene:

Gene:
ALDH1A1
Ensembl Gene ID:
ENSAPLG00000004796
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025539
38113896 - 38152521
38626