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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38179855_38183227_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38179855 - 38183227
Intron Length:
3373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TCTTGAAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTGAAAT
Flanking Amino Acid:
GLILPFILLMVLSIYYLNAT
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
71.2
40.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
67.1
0.39
1
64.3
40.8
Minor 5ss
40.2
-1.1
3.1
51.4
45.2
Minor BPS
73.5
0.82
1.5
90.38
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027579
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044920
38179731 - 38184374
4644