Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38252589_38253041_F

Intron Information:

Intron Rank:

140177

Intron Class:

major

Intron Phase:

Intron Coordinates:

38252589 - 38253041

Intron Length:

453

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTACTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

ACTTTTTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.4

26.8

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

91.7

0.94

0.7

89.8

25.4

Minor 5ss

33.7

-1.9

3.2

40.3

40.1

Minor BPS

59.4

0.37

1.6

72.81

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028360

38252387 - 38253276

890