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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38357947_38358711_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38357947 - 38358711
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
CCATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCTTTCTGAATT
Flanking Amino Acid:
FDLFSADTFEDNLEKFLYLG
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.8
40.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.5
0.78
0.8
79.1
32.7
Minor 5ss
43.3
-0.7
2.9
56.8
47.3
Minor BPS
66.2
0.59
1.4
77.06
39.7

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346