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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38358831_38363493_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38358831 - 38363493
Intron Length:
4663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
TGTTTGTGAGCT
Flanking Amino Acid:
FRLATLGGSQALGLDDVIGN
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
47.2
-0.1
2.3
73.31
43.4

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346