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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38363641_38364032_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38363641 - 38364032
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAGC
5'SS Class:
major
3'SS Sequence:
TTATCCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TATTCCCAAAGT
Flanking Amino Acid:
KHNVKLGLGTDVAGGYSASM
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
68.3
42.9
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
78.6
0.64
0.8
70.7
35.9
Minor 5ss
31
-2.2
2.8
37.5
39.9
Minor BPS
50.6
0.1
2.3
77.88
44.1

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346