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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38364101_38365051_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38364101 - 38365051
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTCCAATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TTGTGTATAATA
Flanking Amino Acid:
AVAHCPSSNFSLSSGILNVQ
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
75.9
35.2
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
79.3
0.66
0.9
71.5
38.5
Minor 5ss
36.6
-1.5
2.7
42.9
38.5
Minor BPS
50.7
0.02
2
67.56
39.7

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346