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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38365150_38366049_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38365150 - 38366049
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGCA
5'SS Class:
major
3'SS Sequence:
CGTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAAAT
Flanking Amino Acid:
YDKNKLLTSKTVMAHACYLS
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
66
40.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.5
0.73
0.7
81.3
30.8
Minor 5ss
37.1
-1.5
3.4
50.2
46.2
Minor BPS
69.5
0.69
1.7
88.72
36.1

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346