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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38368801_38371607_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38368801 - 38371607
Intron Length:
2807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TATGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AAATTTATAACA
Flanking Amino Acid:
TTADSVQETERFVRELTERQ
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.9
0.76
0.8
81
36.2
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
56.2
0.19
1.5
64.56
35

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346