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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38371714_38373708_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38371714 - 38373708
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
DTSLLLAEIIDKFGQRAFVG
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.5
0.64
0.9
74.3
35.1
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346